Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs160652 chr7:65538431 A/G 6.46E-6 292 21.27 21.97 4.62 KM Plot
CESC rs160653 chr7:65536780 A/G 6.82E-7 294 21.27 21.3 7.57 KM Plot
CESC rs160657 chr7:65546356 C/T 7.25E-6 292 21.2 22.45 4.62 KM Plot
CESC rs1642851 chr14:76985410 C/T 2.71E-5 299 22.28 20.43 9.17 KM Plot
CESC rs16832082 chr3:161043571 A/G 1.0E-5 296 25.82 20.38 19.05 KM Plot
CESC rs16861032 chr3:113187675 C/G 3.31E-8 299 2.47 21.3 21.85 KM Plot
CESC rs16878137 chr8:109567733 G/A 3.64E-5 289 21.3 21.62 11.6 KM Plot
CESC rs16878143 chr8:109568370 A/C 3.8E-5 288 21.3 21.27 11.6 KM Plot
CESC rs16942887 chr16:67928042 G/A 2.43E-6 295 20.43 28.77 17.15 KM Plot
CESC rs16953134 chr15:69618161 G/T 3.29E-8 299 21.4 22.07 4.55 KM Plot
CESC rs16970649 chr19:36222857 C/T 5.89E-5 290 21.2 24.63 3.17 KM Plot
CESC rs1703925 chr8:608279 A/G 9.61E-5 293 4.2 19.17 21.27 KM Plot
CESC rs17089409 chr13:73065166 A/C 2.54E-7 299 5.23 23.3 21.2 KM Plot
CESC rs17107449 chr10:81715696 C/T 4.01E-9 297 25.17 16.42 2.62 KM Plot
CESC rs17118370 chr8:13893230 C/T 2.46E-9 299 21.27 21.65 7.48 KM Plot